NC State University - W.M. Keck FT-ICR Mass Spectrometry Laboratory

Publications

Bibliography (full-length articles)
- 2008 | 2007 | 2006 | 2005 | 2004 | 2003 | 2002 | 2001 | 2000 | 1999 | 1998 | 1997 | 1996 | 1995 | 1994
Reviews/Tutorials (peer-reviewed)
Book Chapters
Editorials
Plenary/Key Note Lectures
Patents

Bibliography (full-length articles)

Number of citations as of January 28, 2008 in parentheses

2008 • Back to top

128. "Calibration Laws Based on Multiple Linear Regression Applied to Matrix-Assisted Laser Desorption / Ionization Fourier Transform Ion Cyclotron Resonance Mass Spectrometry"
D.K. Williams, Jr., M.A. Chadwick, T. Islam Williams, D.C. Muddiman
Journal of Mass Spectrometry, 2008, in press.
127. "Construction of a Versatile High Precision Ambient Ionization Source for Direct Analysis and Imaging"
J.S. Sampson, A.M. Hawkridge, D.C. Muddiman
Journal of the American Society for Mass Spectrometry, 2008, submitted.
126. "Synthesis, characterization, and application of iodoacetamide derivatives utilized for the AliPHAT strategy"
D.K. Williams Jr., C.W. Meadows, I.D. Bori, A.M. Hawkridge, D.L. Comins, and D.C. Muddiman
Journal of the American Chemical Society, 2008, 130(7), 2122-3.
125. "Coordination-driven self-assembly of cavity-cored multiple crown ether derivatives and poly[2]pseudorotaxanes"
K. Ghosh, H.B. Yang, B.H. Northrop, M.M. Lyndon, Y.R. Zheng, D.C. Muddiman, and P.J. Stang
Journal of the American Chemical Society, 2008, 130(15), 5320-34.
124. "A new family of multiferrocene complexes with enhanced control of structure and stoichiometry via coordination-driven self-assembly and their electronchemistry"
Y.B. Yang, K. Ghosh, Y. Zhao, B.H. Northrop, M.M. Lyndon, D.C. Muddiman, and P.J. Stang
Journal of the American Chemical Society, 2008, 130(3), 839-41.
123. "Mass measurement accuracy comparisons between a double-focusing magnetic sector and a time-of-flight mass analyzer"
M.S. Bereman, M.M. Lyndon, R.B. Dixon, and D.C. Muddiman
Rapid Communications in Mass Spectrometry, 2008, 22(10), 1563-1566.
122. "Development and Characterization of a New Ionization Technique for Analysis of Biological Macromolecules: Liquid Matrix-Assisted Laser Desorption Electrospray Ionization"
J.S. Sampson, A.M. Hawkridge, D.C. Muddiman,
Analytical Chemistry, 2008, submitted.
121. "Top-Down Identification and Quantification of Stable Isotope Labeled Proteins from A. flavus Using Online nano-Flow Reversed Phase Liquid Chromatography Coupled to a LTQ-FT-ICR Mass Spectrometer"
T.S. Collier, A.M. Hawkridge, D.R. Georgianna, G.A. Payne, D.C. Muddiman
Analytical Chemistry, 2008, in press.
120. "Studying O-linked Protein Glycosylations in Human Plasma"
T. Islam Williams, D.A. Saggese, D.C. Muddiman,
Journal of Proteome Research, 2008, ASAP Article (published online).
119. "Self-Assembled Trigonal Prisms: Face-Based Conformational Chirality, Internal Mobility, and Caged Solvent Vapor Bubbles,"
D.C. Caskey, T. Yamamoto, C. Addicott, R.K. Shoemaker, J. Vacek, D. Horinek, A.M. Hawkridge, D.C. Muddiman, G.S. Kottas, J. Michl, P.J. Stang,
Journal of the American Chemical Society, 2008, in press.
118. "Effect of Plasma Protein Depletion on BNP-32 Recovery"
A.M. Hawkridge, D.C. Muddiman
Clinical Chemistry, 2008, Clinical Chemistry, 2008, 54(5), 933-934.
117. "A Novel Approach to Remote Analyte Sampling Transport and Ionization Using a Custom Made Air Ejector Nebulizer"
R.B. Dixon, J.S. Sampson, D.C. Muddiman, A.M. Hawkridge,
Analytical Chemistry, 2008, in press.
116. "Investigations with O-linked Protein Glycosylations by Matrix-assisted Laser Desorption/Ionization Fourier Transform Ion Cyclotron Resonance Mass Spectrometry"
T. Islam Williams, D. A. Saggese, K. L. Toups, J. L. Frahm, H. J. An, B. Li, C. B. Lebrilla, D.C. Muddiman,
Journal of Mass Spectrometry, 2008 (published online). (0)

2007 • Back to top

115. "Quantitative Comparison of a Flared and a Standard Heated Metal Capillary Inlet with a Voltage-Assisted Air Amplifier on an Electrospray Ionization Linear Ion Trap Mass Spectrometer"
R.B. Dixon and D.C. Muddiman,
Rapid Communications in Mass Spectrometry, 2007, 21, (19), 3207-3212. (0)
114. "Dual Electrospray Ionization Source for Electron-Transfer Dissociation on a Hybrid Linear Ion Trap-Orbitrap Mass Spectrometer"
D.K. Williams, G.C. McAlister, D.M. Good, J.J. Coon, D.C. Muddiman,
Analytical Chemistry, 2007, 79, (20), 7916-7919. (0)
113. "Probing the Mechanisms of an Air Amplifier using a LTQ-FT-ICR-MS and Fluorescence Spectroscopy"
R.B. Dixon, D.C. Muddiman, A.M. Hawkridge, A.G. Fedorov,
Journal of the American Society for Mass Spectrometry, 2007, 18, (11), 1909-1913. (0)
112. "Carbohydrate Analysis by Desorption Electrospray Ionization Fourier Transform Ion Cyclotron Resonance Mass Spectrometry"
M.S. Bereman, T. Islam Williams, D.C. Muddiman,
Analytical Chemistry, 2007, 79, (22), 8812-8815. (0)
111. "Human Proteinpedia: A Portal for Sharing and Integration of Human Protein Data"
Nature Biotechnology, 2007, submitted.
110. "Differential Protein Expression in Male and Female Human Lumbar Cerebrospinal Fluid using iTRAQ Reagents after Abundant Protein Depletion"
Y. Ogata, M.C. Charlesworth, L. Higgins, B.M. Keegan, S. Vernino, and D.C. Muddiman,
Proteomics, 2007, 7, (20), 3726-3734. (0)
109. "Parts-Per-Billion Mass Measurement Accuracy Achieved through the Combination of Multiple Linear Regression and Automatic Gain Control in a Fourier Transform Ion Cyclotron Resonance Mass Spectrometer"
D.K. Williams and D.C. Muddiman,
Analytical Chemistry, 2007, 79, 13, 5058-5063. (0)
Note: This manuscript was dedicated to Professor David M. Hercules.
108. "Highly Efficient Approach to the Self-assembly of Hexagonal Cavity-Cored Tris[2]pseudorotaxanes from Several Components via Multiple Noncovalent Interactions"
H.B. Yang, K. Ghosh, B.H. Northrop, Y.R. Zheng, M.M. Lyndon, D.C. Muddiman, P.J. Stang,
Journal of the American Chemistry Society, 2007, 129, (46), 14187. (0)
107. "Achieving Augmented Limits of Detection for Peptides with Hydrophobic Alkyl Tags (ALiPHAT)"
J.L. Frahm, I.D. Bori, D.L. Comins, A.M. Hawkridge, D.C. Muddiman,
Analytical Chemistry, 2007, Accelerated Article, 79, 11, 3989-3995. (0)
Note: This manuscript was dedicated to the late A.G. Sharkey.
106. "Remote Mass Spectrometric Sampling of Electrospray and Desorption Electrospray-Generated Ions Using an Air Ejector"
R.B. Dixon, M.S. Bereman, D.C. Muddiman, A.M. Hawkridge,
Journal of the American Society for Mass Spectrometry, 2007, 18, (10), 1844-1847. (0)
105. "Detection of Attomole Amounts of Analyte by Desorption Electrospray Ionization Mass Spectrometry (DESI-MS) Determined using Fluorescence Spectroscopy,"
M.S. Bereman, D.C. Muddiman,
Journal of the American Society for Mass Spectrometry, 2007, 18 (6), 1093-1096. (3)
104. "Understanding the Influence of Post-Excite Radius and Axial Confinement on Quantitative Proteomic Measurements using Fourier Transform-Ion Cyclotron Resonance Mass Spectrometry,"
J.L. Frahm, C.M. Capo-Velez, and D.C. Muddiman,
Rapid Communications in Mass Spectrometry, 2007, 21(7), 1196-1204. (0)
103. "(Details of) The Structure Determination of the Sulfated Steriods PSDS and PADS-New Components of the Sea Lamprey (Petromyzon marinus) Migratory Pheromone,"
T.R. Hoye, V. Dvornikovs, J.M. Fine, K.R. Anderson, C.S. Jeffrey, D.C. Muddiman, F. Shao, P.W. Sorensen, and J. Wang,
Journal of Organic Chemistry, 2007, 72 (20), 7544-7550. (0)
102. "Effect of Matrix Crystal Structure on Ion Abundance of Carbohydrates by Matrix-assisted Laser Desorption/Ionization Fourier Transform Ion Cyclotron Resonance Mass Spectrometry,"
T. Islam Williams, D.A. Saggese, R.J. Wilcox, J.D. Martin, and D.C. Muddiman,
Rapid Communications in Mass Spectrometry, 2007, 21(5), 807-811. (3)
101. "Coordination-Driven Self-Assembly of Metallodendrimers Possessing Well Defined and Controllable Cavities as Cores,"
H Yang, A.M. Hawkridge, S.D. Huang, N. Das, S.D. Bunge, D.C. Muddiman, and P.J. Stang,
Journal of the American Chemical Society, 2007, 129(7), 2120-2129. (2)
100. "Direct Characterization of Intact Polypeptides by Matrix-Assisted Laser Desorption Electrospray Ionization (MALDESI) Quadrupole Fourier Transform Ion Cyclotron Resonance Mass Spectrometry"
J.S. Sampson, A.M. Hawkridge, D.C. Muddiman,
Rapid Communications in Mass Spectrometry, 2007, 21 (7), 1150-1154. (5)
99. "Sub Parts-Per-Million Mass Measurement Accuracy of Intact Proteins and Product Ions Achieved using a Dual Electrospray Ionization Quadrupole Fourier Transform Ion Cyclotron Resonance Mass Spectrometer"
D.K. Williams, Jr., A.M. Hawkridge, D.C. Muddiman,
Journal of the American Society for Mass Spectrometry, 2007, 18, 1-7. (1)

2006 • Back to top

98. "Coordination-Driven Face-Directed Self-Assembly of 3-D Trigonal Prisms,"
T. Yamamoto, C. Addicott, A.M. Hawkridge, D.C. Muddiman, D.C. Caskey, G.S. Kottas, J. Michl, and P.J. Stang,
Journal of the American Chemical Society, 2006, in preparation. (0)
97. "Direct High Resolution Protein Analysis by Desorption Electrospray Ionization (DESI) Fourier Transform Ion Cyclotron Resonance Mass Spectrometry,"
M.S. Bereman, L. Nyadong, F.M. Fernandez, and D.C. Muddiman,
Rapid Communications in Mass Spectrometry, 2006, 20 (22) 3409-3411. (13)
96. "Generation and Detection of Multiply-Charged Peptides and Proteins by Matrix-Assisted Laser Desorption Electrospray Ionization (MALDESI) Fourier Transform Ion Cyclotron Resonance Mass Spectrometry,"
J.S. Sampson, A.M. Hawkridge, and D.C. Muddiman,
Journal of the American Society for Mass Spectrometry, 2006, 17 (12), 1712-1716. (9)
95. "Incorporation of 2,6-Di(4,4’-dipyridyl)-9-Thiabicyclo[3.3.1]nonane into Discrete 2D Supramolecules via Coordination-Driven Self-Assembly,"
H. Yang, N. Das, F. Huang, A.M. Hawkridge, D.D. Diaz, A.M. Arif, M.G. Finn, D.C. Muddiman, and P.J. Stang,
Journal of Organic Chemistry, 2006, 71 (17) 6644-6647. (3)
94. "Elevated Levels of Phosphorylated Fibrinogen Alpha Isoforms in the Plasma of Ovarian Cancer Patients,"
Y. Ogata, C.J. Holtz-Hepplman, M.C. Charlesworth, W.A. Cliby, H.R. Bergen III, D.A. Saggese, and D.C. Muddiman,
Journal of Proteome Research, 2006, 5(12), 3318-3325. (7)
93. "Annexin II: A Prognostic Marker for Squamous Cell Carcinoma of the Head and Neck,"
W. Lin, M.C. Charlesworth, E.E. Alon, K.V. Ballman, J.C. Cheville, Z. Chen, X. Zhang, B.J. Madden, L.L, Hinkley, L.M. Murphy, R.G. Vile, S.E. Strome, D.C. Muddiman, and J.L. Kasperbauer,
Clinical Cancer Research, 2006, submitted. (0)
92. "Molecular Architecture via Coordination: Self-Assembly of Nanoscale Hexagonal Metallodendrimers with Designed Building Blocks,"
H. Yang, N. Das, F. Huang, A.M. Hawkridge, D.C. Muddiman, and P.J. Stang,
Journal of American Chemical Society, 2006, 128 (31), 10014-10015. (6)
91. "A Method for Automatically Interpreting Mass Spectra of ¹⁸O Labeled Isotopic Clusters,"
C.J. Mason, T.M. Therneau, J.E. Eckel-Passow, K.J. Johnson, A.L. Oberg, J.E. Olson, K.S. Nair, D.C. Muddiman, and H.R. Bergen, III,
Molecular and Cellular Proteomics, 2007, 6, (2), 305-318. (1)
90. "Accessible Proteomics Space and its Implications for Peak Capacity for Zero-, One- and Two- Dimensional Separations Coupled with FT-ICR and TOF Mass Spectrometry,"
J.L. Frahm, B.E. Howard, S. Heber, and D.C. Muddiman,
Journal of Mass Spectrometry, 2006, 41, 3, 281-288. (6)
89. "Chromatin Assembly Factor-1 Interacts with Histone H3 Methylated at Lysine 79 in the Processes of Epigenetic Silencing and DNA Repair,"
H. Zhou. B.J. Madden, D.C. Muddiman, and Z. Zhang,
Biochemistry, 2006, 45(9), 2852-2861. (1)
88. "Identification of subunit-subunit interactions in bacteriophage P22 procapsids by chemical cross-linking and mass spectrometry,"
S. Kang, A.M. Hawkridge, K.L. Johnson, D.C. Muddiman, and P.E Prevelige,
Journal of Proteome Research, 2006, 5, 2, 370-377. (4)

2005 • Back to top

87. "Identification of Class II HLA-DRB1*03-restricted Measles Virus Peptides by 2D-Liquid Chromatography Tandem Mass Spectrometry,"
K.L. Johnson, I.G. Ovsyannikova, G.A. Poland, and D.C. Muddiman,
Journal of Proteome Research, 2005, 4(6), 2243-2249. (5)
86. "Accurate Mass Precursor Ion Data and Tandem Mass Spectrometry Identify a HLA Class I Peptide Originating from Vaccinia Virus,"
K.L. Johnson, B.J. Madden, I.G. Ovsyannikova, G.A. Poland, and D.C. Muddiman,
Journal of the American Society for Mass Spectrometry, 2005, 16(11), 1812-1817. (6)
85. "Gentle Protein Ionization Assisted by High Velocity Gas Flow,"
P. Yang, R.G. Cooks, Z. Ouyang, A.M. Hawkridge, and D.C. Muddiman,
Analytical Chemistry, 2005, 77 (19), 6174-6183. (10)
84. "Quantitative Mass Spectral Evidence for the Absence of Circulating Brain Natriuretic Peptide (BNP-32) in Severe Human Heart Failure,"
A.M. Hawkridge, D.M. Heublein, H.R. Bergen, III, J.C. Burnett, Jr., and D.C. Muddiman,
Proceedings of the National Academy of Sciences USA, 2005, 102(48) 17442-17447. (29)
83. "Normalization of Relative Peptide Ratios Derived from In Gel Digests: Applications to Protein Variant Analysis at the Peptide Level,"
H.R. Bergen, D.C. Muddiman, J.D. Hoyer, and J.F. O'Brien,
Rapid Communications in Mass Spectrometry, 2005, 19 (19), 2871-2877. (2)
82. "Reproducibility of Retention Time using a Splitless nanoLC Coupled to an ESI-FTICR Mass Spectrometer,"
D.C. Muddiman, C.J. Mason, and K.L. Johnson,
Journal of Biomolecular Techniques, 2005, 16, 4, 414-422. (0)
81. "Quantitative Protein Expression Analysis of CLL B cells from Mutated and Unmutated IgVH Subgroups using Acid-Cleavable Isotope-Coded Affinity Tag Reagents,"
D.R. Barnidge, D.F. Jelinek, D.C. Muddiman, and N.E. Kay,
Journal of Proteome Research, 2005, 4 (4), 1310-1317. (4)
80. "Coordination-Driven Self-Assemblies with a Carborane Backbone,"
H. Jude, H. Disteldorf, S. Fischer, T. Wedge, A.M. Hawkridge, A.M. Arif, M.F. Hawthorne, D.C. Muddiman, and P.J. Stang,
Journal of the American Chemical Society, 2005, 127, (34) 12131-12139. (23)
79. "Primary Trabecular Meshwork Cells Incubated in Human Aqueous Humor Differ from Cells Incubated in Serum Supplements,"
M.P Fautsch, K.G. Howell, A.M. Vrabel, M.C. Charlesworth, D.C. Muddiman, and D.H. Johnson,
Ophthalmology and Vision Science, 2005, 46(8), 2848-2856. (3).
78. "Evaluation of Protein Depletion Methods for the Analysis of Total-, Phospho- and Glycoproteins in Lumbar Cerebrospinal Fluid,"
Y. Ogata, M.C. Charlesworth, and D.C. Muddiman,
Journal of Proteome Research, 2005, 05, 4(3), 837-845. (14)
77. "Statistical Evaluation of Internal and External Calibration Laws Utilized in Fourier Transform Ion Cyclotron Resonance Mass Spectrometry,"
D.C. Muddiman and A.L. Oberg,
Analytical Chemistry, 2005, 77(8), 2406-2414. (9)
76. "Effect of Post-Excitation Radius on Ion Abundance, Mass Measurement Accuracy, and Isotopic Distributions in Fourier Transform Ion Cyclotron Resonance Mass Spectrometry,"
A.M. Hawkridge, A.I. Nepomuceno, S.L. Lovik, C.J. Mason, and D.C. Muddiman,
Rapid Communications in Mass Spectrometry, 2005, 19(7), 915-918. (3)
75. "Mapping Sites of Protein Phosphorylation by Mass Spectrometry Utilizing a Chemical-Enzymatic Approach: Characterization of Products from an a S1Casein Phosphopeptide,"
D.J. McCormick, M.W. Holmes, D.C. Muddiman, and B.J. Madden,
Journal of Proteome Research, 2005, 4(2), 424-434. (2)
74. "Derivatives of Pentamidine Designed to Target the Leishmania Lipophosphoglycan,"
K.L. Kramp, K. Buck, J.W. Flora, D.C. Muddiman, K.M. Slunt, and T.A. Houston,
Tetrahedron Letters, 2005, 46(4), 695-698. (8)
73. "Déjà vu all over again: SKIN-CAP is still available and still contains a high potency glucocorticosteroid,"
D.L. Swanson, M.R. Pittelkow, L.M. Benson, A.M. Hawkridge, and D.C. Muddiman,
Archives of Dermatology, 2005, 141(6), 801-803. (0)
72. "Leveling Response Factors in the Electrospray Ionization Process Using a Heated Capillary Interface,"
J.L. Frahm, M.J. Burke, and D.C. Muddiman,
Journal of the American Society for Mass Spectrometry, 2005, 16(5), 772-778. (4)
71. "Protein Expression Profiling of CLL B cells using Off-Line Strong Cation Exchange Chromatography and Capillary LC-MS/MS,"
D.R. Barnidge, R.C. Tschumper, D.F. Jelinek, D.C. Muddiman, and N.E. Kay,
Journal of Chromatography B Analytical Technology Biomedical Life Sciences, 2005, 819, 33-39. (4)

2004 • Back to top

70. "Accurate and Expedited Diagnosis of Amyloidotic Transthyretin Neuropathy: Proteomic and Genomic Approach,"
C.J. Klein, C.H. Kim, P.J.B. Dyck, S.R. Zeldenrust, H.R. Bergen, III, J.F. O’Brien, A.I. Nepomuceno, M.L. Butz, and S.I. Thibodeau,
Annuals of Neurology, 2004, 56 (8) S29. (1)
69. "Analysis of the Low Molecular Weight Fraction of Serum by LC-DualESI-FT-ICR Mass Spectrometry: Precision of Retention Time, Mass, and Ion Abundance,"
K.L. Johnson, C.J. Mason, D.C. Muddiman, and J.E. Eckel,
Analytical Chemistry, 2004, 76(17), 5097-5103. (19)
68. "Informed use of proteolytic inhibitors in biomarker discovery,"
H.R. Bergen, III, M.G. Klug, M.E. Bolander, and D.C. Muddiman,
Rapid Communications in Mass Spectrometry, 2004, 18, 1001-1002. (2)
67. "Analytical Performance of a Venturi Device Integrated into an Electrospray Ionization Fourier Transform Ion Cyclotron Resonance Mass Spectrometer for Analysis of Nucleic Acids,"
A.M. Hawkridge, L. Zhou, M.L. Lee, and D.C. Muddiman,
Analytical Chemistry, 2004, 76, 4118-4122. (18)
66. "Identification of Transthyretin Variants using Sequential Proteomic and Genomic Analysis,"
H.R. Bergen, III, S.R. Zeldenrust, M.L. Butz, D.S. Snow, P.J. Dyck, P.J.B. Dyck, C.J. Klein, J.F. O’Brien, S.N. Thibodeau, and D.C. Muddiman,
Clinical Chemistry, 2004, 50, 1544-1552. (21)
65. "Detection of Genetic Variants of Transthyretin by LC Dual Electrospray Ionization Fourier Transform Ion Cyclotron Resonance Mass Spectrometry,"
A.I. Nepomuceno, C.J. Mason, D.C. Muddiman, H.R. Bergen, III, and S.R. Zeldenrust,
Clinical Chemistry, 2004, 50, 1535-1543. (12)
64. "Evaluation of a Cleavable Stable Isotope Labeled Synthetic Peptide for Absolute Protein Quantification using LC-MS/MS,"
D.R. Barnidge, G.D. Hall, J.L. Stocker, and D.C. Muddiman,
Journal of Proteome Research, 2004, 3, 658-661. (16)
63. "Androgens Negatively Regulate Forkhead Transcription Factor FKHR (FOXO1) Through a Proteolytic Mechanism in Prostate Cancer Cells,"
H. Huang, D.C. Muddiman, and D.J. Tindall,
Journal of Biological Chemistry, 2004, 279, 13866-13877. (16)
62. "Discovery of Ovarian Cancer Biomarkers in Serum Using NanoLC Electrospray Ionization TOF and FT-ICR Mass Spectrometry,"
H.R. Bergen, III, G. Vasmatzis, W.A. Cliby, K.L. Johnson, A.L. Oberg and D.C. Muddiman,
Disease Markers, 2003-2004, 19, 239-249. (18)
61. "Utility of Accurate Monoisotopic Mass Measurements to Confidently Identify Lambda Exonuclease Generated Single-Stranded Amplicons Containing 7-Deaza Analogs by Electrospray Ionization FT-ICR Mass Spectrometry,"
J.L. Frahm, C.J. Mason, and D.C. Muddiman,
International Journal of Mass Spectrometry, 2004, 234, 79-87. (5)
60. "Determination of the Relative Energies of Activation for the Dissociation of Aromatic versus Aliphatic Phosphopeptides by ESI-FT-ICR-MS and IRMPD,"
J.W. Flora and D.C. Muddiman,
Journal of the American Society for Mass Spectrometry, 2004, 15, 121-127. (5)
59. "A Method for Calculating 16O/18O Peptide Ion Ratios for the Relative Quantification of Proteomes,"
K.L Johnson and D.C. Muddiman,
Journal of the American Society for Mass Spectrometry, 2004, 15, 437-445. (25)
58. "Identification and Characterization of Novel, Naturally Processed Measles Virus Class II HLA-DRB1 Peptides,"
I.G. Ovsyannikova, K.L. Johnson, D.C. Muddiman, R.A. Vierkant, and G.A. Poland,
Journal of Virology, 2004, 78, 42-51. (11)
57. "Absolute Quantification of the Model Biomarker Prostate-Specific Antigen in Serum by LC-MS/MS Using Protein Cleavage and Isotope Dilution Mass Spectrometry,"
D.R. Barnidge, M.K. Goodmanson, G.G. Klee, and D.C. Muddiman,
Journal of Proteome Research, 2004, 3, 644-652. (44)

2003 • Back to top

56. "Enzymatic Strategies for DNA Characterization by Electrospray Ionization Mass Spectrometry," A.P. Null, L.M. Benson, and D.C. Muddiman,
Rapid Communications in Mass Spectrometry, 2003, 17, 2699-706. (4)
55. "Coordination-Driven Self-Assembly of Supramolecular Cages: Heteroatom-Containing and Complementary Trigonal Prisms,"
Y.K. Kryschenko, S.R. Seidel, D.C. Muddiman, A.I. Nepomuceno, and P.J. Stang,
Journal of the American Chemical Society, 2003, 125, 9647-9652. (28)
54. "Dual Electrospray Ionization Source for Confident Generation of Accurate Mass Tags Using Liquid Chromatography Fourier Transform Ion Cyclotron Resonance Mass Spectrometry,"
A.I. Nepomuceno, D.C. Muddiman, H.R. Bergen, III, J.R. Craighead, M.J. Burke, P.E. Caskey, and J.A. Allan,
Analytical Chemistry, 2003, 75, 3411-3418. (30)
53. "Cancer Biomarkers: How Proteomics is Leading to the Discovery of New Markers,"
D.C. Muddiman, W.A. Cliby, and H.R. Bergen, III,
Clinical Laboratory News, 2003, 29, 12-16. (0)
52. "Naturally Processed Measles Virus Peptide Eluted From Class II HLA-DRB1*03 Recognized by T. Lymphocytes From Human Blood,"
I.G. Ovsyannikova, K.L. Johnson, S. Naylor, D.C. Muddiman, and G.A. Poland,
Virology, 2003, 312, 495-506. (9)
51. "Determination of a Correction to Improve Mass Measurement Accuracy of Isotopically Unresolved Polymerase Chain Reaction Amplicons by Electrospray Ionization Fourier Transform Ion Cyclotron Resonance Mass Spectrometry,"
A.P. Null and D.C. Muddiman,
Rapid Communications in Mass Spectrometry, 2003, 17, 1714-1722. (4)
50. "Mass Spectral Determination of Skeletal/Cardiac Actin Isofrom Rations in Cardiac Muscle,"
H.R. Bergen, III, K. Ajtai, T.P. Burghardt, A.I. Nepomuceno, and D.C. Muddiman,
Rapid Communications in Mass Spectrometry, 2003, 17, 1467-1471. (9)
49. "Implications of Hydrophobicity and Free Energy of Solvation for Characterization of Nucleic Acids by Electrospray Ionization Mass Spectrometry,"
A.P. Null, A.I. Nepomuceno, and D.C. Muddiman,
Analytical Chemistry, 2003, 75, 1331-1339. (24)
48. "Advantages of Thermococcus kodakaraenis (KOD) DNA Polymerase for PCR-Mass Spectrometry Based Analyses,"
L.M. Benson, A.P. Null, and D.C. Muddiman,
Journal of the American Society for Mass Spectrometry, 2003, 14, 601-604. (9)
47. "1H NMR and electrospray mass spectrometry of the mono-ionized Bis(2,2-bis(4,5-dimethylimidazole)chloronitrosylruthenium(II) complex,"
T.W. Stringfield, K.V. Somayajula, D.C. Muddiman, J.F. Flora, and R.E. Shepherd,
Inorganica Chemica Acta, 2003, 343, 317-328. (4)

2002 • Back to top

46. "Tailoring the Gas-Phase Dissociation and Determining the Relative Energy of Activation for Dissociation of 7-Deaza Modified Oligonucleotides Containing a Repeating Motif,"
J.C. Hannis and D.C. Muddiman,
International Journal of Mass Spectrometry and Ion Processes, 2002, 219, 139-150. (18)
45. "CEPH Family 1362 STR Database: An Online Resource for Characterization of PCR Products Using Electrospray Ionization Mass Spectrometry,"
A.P. Null and D.C. Muddiman,
Journal of the American Society for Mass Spectrometry, 2002, 13, 1, 89-90. (2)
44. "Evaluation of Sample Preparation Techniques for High-Sensitivity Mass Measurements of PCR Products using ESI-FT-ICR-MS,"
A.P. Null, L.T. George, and D.C. Muddiman,
Journal of the American Society for Mass Spectrometry, 2002, 13, 4, 338-344. (14)
43. "Solution Composition and Thermal Denaturation for the Production of Single-Stranded PCR Amplicons: Piperidine-Induced Destabilization of the DNA Duplex?,"
J.B. Mangrum, J.W. Flora, and D.C. Muddiman,
Journal of the American Society for Mass Spectrometry, 2002, 13, 3, 232-240. (13)
42. "Gas-Phase Ion Unimolecular Dissociation for Rapid Phosphopeptide Mapping by IRMPD in a Penning Ion Trap: An Energetically Favored Process,"
J.W. Flora and D.C. Muddiman,
Journal of the American Chemical Society, 2002, 124, 23, 6546-6547. (16)
41. "Dual-micro-ESI Source for Precise Mass Determination on a Quadrupole Time-of-Flight Mass Spectrometer for Genomic and Proteomic Applications,"
J.W. Flora, A.P. Null, and D.C. Muddiman,
Analytical and Bioanalytical Chemistry, Advances in Optical Spectroscopy and Mass Spectrometry, 2002, 373, 7, 538-546. (13)

2001 • Back to top

40. "Selective, Sensitive, and Rapid Phosphopeptide Identification in Enzymatic Digests Using ESI-FT-ICR-MS with Infrared Multiphoton Dissociation,"
J.W. Flora and D.C. Muddiman,
Analytical Chemistry, 2001, 73, 3305-3311. (46)
39. "Complete Sequencing of Mono-Deprotonated Peptide Nucleic Acids by Sustained Off-Resonance Irradiation Collision-Induced Dissociation,"
J.W. Flora and D.C. Muddiman,
Journal of the American Society for Mass Spectrometry, 2001, 12, 7, 805-809. (6)
38. "Impact of Ion Cloud Densities on the Measurement of Relative Ion Abundances in Fourier Transform Ion Cyclotron Resonance Mass Spectrometry: Experimental Observations of Coulombically-Induced Cyclotron Radius Perturbations and Ion Cloud Dephasing Rates,
E.F. Gordon and D.C. Muddiman,
Journal of Mass Spectrometry, 2001, 36, 2, 195-203. (12)
37. "Genotyping of Simple and Compound Short Tandem Repeat Loci Using Electrospray Ionization Fourier Transform Ion Cyclotron Resonance Mass Spectrometry,"
A.P. Null, J.C. Hannis, and D.C. Muddiman,
Analytical Chemistry, 2001, 73, 4514-4521. (23)
36. "High Mass Accuracy of Product Ions Produced by SORI-CID Using a Dual Electrospray Ionization Source Coupled with FT-ICR Mass Spectrometry,"
J.W. Flora and D.C. Muddiman,
Analytical Chemistry, 2001, 73, 6, 1247-1251. (49)
35. "Homogeneous Preparations of 3’-Phosphogylcolate-Terminated Oligodeoxynucleotides from Bleomycin-Treated DNA as Verified by Electrospray Ionization Fourier Transform Ion Cyclotron Resonance Mass Spectrometry,"
S. Chen, J.C. Hannis, J.W. Flora, D.C. Muddiman, K. Charles, Y. Yu, and L.F. Povirk,
Analytical Biochemistry, 2001, 289, 274-280. (8)
34. "Genotyping Short Tandem Repeats Using Flow Injection and Electrospray Ionization Fourier Transform Ion Cyclotron Resonance Mass Spectrometry,"
J.C. Hannis and D.C. Muddiman,
Rapid Communications in Mass Spectrometry, 2001, 15, 348-350. (16)
33. "Detection of Double-Stranded PCR Amplicons at the Attomole Level Electrosprayed from Low Nanomolar Solutions using FT-ICR Mass Spectrometry,"
J.C. Hannis and D.C. Muddiman,
Frensius’ Journal of Analytical Chemistry, 2001, 369, 3/4, 246-251. (11)

2000 • Back to top

32. "A Dual Electrospray Ionization Source Combined with Hexapole Accumulation to Achieve High Mass Accuracy of Biopolymers in Fourier Transform Ion Cyclotron Resonance Mass Spectrometry,"
J.C. Hannis and D.C. Muddiman,
Journal of the American Society for Mass Spectrometry, 2000, 11, 876-883. (70)
31. "Genotyping Complex Short Tandem Repeats using Electrospray Ionization Fourier Transform Ion Cyclotron Resonance Multi-Stage Mass Spectrometry,"
SPIE-Bios, 2000, 3926, 36-47. (0)
30. "Preparation of Single-Stranded PCR Products for Electrospray Ionization Mass Spectrometry Using the DNA Repair Enzyme Lambda Exonuclease,"
A.P. Null, J.C. Hannis, and D.C. Muddiman,
The Analyst, 2000, 125, 4, 619-625. (29)
29. "An Experimental and Theoretical Study of the Gas-Phase Decomposition on Mono-Protonated Peptide Nucleic Acids,"
J.W. Flora, D.D. Shillady, and D.C. Muddiman,
Journal of the American Society for Mass Spectrometry, 2000, 11, 615-625. (3)

1999 • Back to top

28. "Consequences of Nucleic Acid Conformation on the Binding of a Trinuclear Platinum Drug,"
M.B.G. Kloster, J.C. Hannis, D.C. Muddiman, and N.P. Farrell,
Biochemistry, 1999, 38, 45, 14731-14737. (50)
27. "Hemoglobinase Activity of the Lysine Gingipain Protease (Kgp) of Porphyromonas gingivalis W83,"
J.P. Lewis, J.C. Hannis, D.C. Muddiman and F.L. Macrina,
Journal of Bacteriology, 1999, 181, 16, 4905-4913. (45)
26. "Accurate Characterization of the Tyrosine Hydroxylase Forensic Allele 9.3 Through Development of Electrospray Ionization Fourier Transform Ion Cyclotron Resonance Mass Spectrometry,"
J.C. Hannis and D.C. Muddiman,
Rapid Communications in Mass Spectrometry, 1999, 13, 954-962. (35)
25. "Precise Mass Measurement of a Double-Stranded 500 Base-Pair (309 kDa) Polymerase Chain Reaction Product by Negative Ion Electrospray Ionization Fourier Transform Ion Cyclotron Resonance Mass Spectrometry,"
D.C. Muddiman, A.P. Null, and J.C. Hannis,
Rapid Communications in Mass Spectrometry, 1999, 13, 1201-1204. (39)
24. "Characterization of a Microdialysis Approach to Prepare Polymerase Chain Reaction Products for Electrospray Ionization Mass Spectrometry Using On-Line Ultraviolet Absorbance Measurements and Inductively Coupled Plasma-Atomic Emission Spectroscopy,"
J.C. Hannis and D.C. Muddiman,
Rapid Communications in Mass Spectrometry, 1999, 13, 5, 323-330. (28)
23. "Hydropathic Influences on the Quantification of Equine Heart Cytochrome c Using Relative Ion Abundance Measurements by Electrospray Ionization Fourier Transform Ion Cyclotron Resonance Mass Spectrometry,"
E.F. Gordon, B.A. Mansoori, C.F. Carroll, and D.C. Muddiman,
Journal of Mass Spectrometry, 1999, 34, 10, 1055-1062. (25)
22. "Quantification of Singly-Charged Biomolecules by Electrospray Ionization Fourier Transform Ion Cyclotron Resonance Mass Spectrometry using an Internal Standard,"
E.F. Gordon and D.C. Muddiman,
Rapid Communications in Mass Spectrometry, 13, 164-171, 1999. (16)

1998 • Back to top

21. "Comprehensive Nomenclature for the Fragment Ions Produced from Collisional Activation of Peptide Nucleic Acids,"
J.W. Flora and D.C. Muddiman,
Rapid Communications in Mass Spectrometry, 1998, 12, 759-762. (8)
20. "Nanoelectrospray Mass Spectrometry Using Non-Metalized Tapered (50 -> 10 µm) Fused-Silica Capillaries,"
J.C. Hannis and D.C. Muddiman,
Rapid Communications in Mass Spectrometry, 1998, 12, 443-448. (52)
19. "Heterogeneity in Bacillus cereus PCR Products Detected by ESI-FT-ICR Mass Spectrometry,"
D.S. Wunschel, D.C. Muddiman, K.F. Fox, A. Fox, and R.D. Smith,
Analytical Chemistry, 1998, 70, 1203-1207. (19)

1997 • Back to top

18. "Application of Sequential Paired Covariance to Liquid Chromatography-Mass Spectrometry Data: Enhancements in Both the Signal-to-Noise Ratio and the Resolution of Analyte Peaks in the Chromatogram,"
D.C. Muddiman, B.M. Huang, G.A. Anderson, A. Rockwood, S.A. Hofstadler, M.S. Weir-Lipton, A. Proctor, Q. Wu, and R.D. Smith,
Journal of Chromatography A., 1997, 771, 1-7. (11)
17. "Nanoscale Tectonics: Self-Assembly, Characterization, and Chemistry of a Novel Class of Organoplatinum Square Macrocycles,"
J. Manna, C.J. Kuehl, J.A. Whiteford, P.J. Stang, D.C. Muddiman, S.A. Hofstadler, and R.D. Smith,
Journal of the American Chemical Society, 1997, 119, 48, 11611-11619. (70)
16. "Transition-Metal-Mediated Rational Design and Self-Assembly of Chiral, Nanoscale Supramolecular Polyhedra with Unique T-Symmetry,"
P.J. Stang, B. Olenyuk, D.C. Muddiman, and R.D. Smith,
Organometallics, 1997, 16, 14, 3094-3096. (81)
15. "Molecular Architecture via Coordination: Marriage of Crown Ethers and Calixarenes with Molecular Squares, Unique Tetranuclear Metallamacrocycles from Metallacrown Ether and Metallacalixarene Complexes via Self-Assembly,"
P.J. Stang, D.H. Cao, K. Chen, G.M. Gray, D.C. Muddiman, and R.D. Smith,
Journal of the American Chemical Society, 1997, 119, 22, 5163-5168. (95)
14. "Improving the Microdialysis Procedure for Electrospray Ionization-Mass Spectrometry of Biological Samples,"
C. Liu, D.C. Muddiman, K. Tang, and R.D. Smith,
Journal of Mass Spectrometry, 1997, 32, 425-431. (42)
13. "Length and Base Composition of PCR-Amplified Nucleic Acids Using Mass Measurements from Electrospray Ionization Mass Spectrometry,"
D.C. Muddiman, G.A. Anderson, S.A. Hofstadler, and R.D. Smith,
Analytical Chemistry, 1997, 69, 1543-1549. (41)

1996 • Back to top

12. "Design and Self-Assembly of Nanoscale Organoplatinum Macrocyclic Squares,"
J. Manna, J.A. Whiteford, P.J. Stang, D.C. Muddiman, and R.D. Smith,
Journal of the American Chemical Society, 1996, 118, 8731-8732. (65)
11. "Characterization of PCR Products from Bacilli Using Electrospray Ionization FT-ICR Mass Spectrometry,"
D.C. Muddiman, D.S. Wunschel, C. Liu, L. Pasa-Tolic, K.F. Fox, A. Fox, G.A. Anderson, and R.D. Smith,
Analytical Chemistry, 1996, 68, 3705-3712. (76)
10. "A Quantitative Study of in vitro Hepatic Metabolism of Tacrolimus (FK-506) Using Secondary Ion and Matrix-Assisted Laser Desorption/Ionization Mass Spectrometry,"
A.I. Gusev, D.C. Muddiman, A. Proctor, A.G. Sharkey, D.M. Hercules, P.N.V. Tata, and R. Venkataramanan,
Rapid Communications in Mass Spectrometry, 1996, 10, 1215-1218. (16)
9. "Charge-State Reduction with Improved Signal Intensity of Oligonucleotides in Electrospray Ionization Mass Spectrometry,"
D.C. Muddiman, X. Cheng, H.R. Udseth , and R.D. Smith,
Journal of the American Society of Mass Spectrometry, 1996, 7, 697-706. (70)
8. "Analysis of Double-stranded Polymerase Chain Reaction Products from the Bacillus cereus Group by Electrospray Ionization Fourier Transform Ion Cyclotron Resonance Mass Spectrometry,"
D.S. Wunschel, K.F. Fox, A. Fox, J.E. Bruce, D.C. Muddiman and R.D. Smith,
Rapid Communications in Mass Spectrometry, 1996, 10, 29-35. (46)
7. "Enhancement of Ion Intensity in Time-of-Flight Secondary-Ionization Mass Spectrometry,"
A.J. Nicola, D.C. Muddiman, and D. M. Hercules,
Journal of the American Society for Mass Spectrometry, 1996, 7, 467-472. (22)
6. "Important Aspects Concerning the Quantification of Biomolecules by Time-of-Flight Secondary Ion Mass Spectrometry,"
D.C. Muddiman, A.J. Nicola, A. Proctor, and D.M. Hercules,
Applied Spectroscopy, 1996, 50, 161-166. (8)
5. "Direct Quantification of Cocaine in Urine by Time-of-Flight Mass Spectrometry,"
D.C. Muddiman, A.I. Gusev, L.B. Martin, and D.M. Hercules,
Fresenius' Journal of Analytical Chemistry, 1996, 354, 103-110. (13)

1995 • Back to top

4. "Application of Sequential Paired Covariance to Capillary Electrophoresis Electrospray Ionization Time-of-Flight Mass Spectrometry: Unraveling the Signal from the Noise in the Electropherogram,"
D.C. Muddiman, A.L. Rockwood, Q. Gao, J.C. Severs, H.R. Udseth, R.D. Smith, and A. Proctor,
Analytical Chemistry, 1995, 67, 4371-4375. (39)
3. "Simultaneous Quantification of Cyclosporin A and its Major Metabolites by TOF-SIMS and MALDI/TOF-MS Utilizing Data Analysis Techniques: A Comparison with High Performance Liquid Chromatography,"
D.C. Muddiman, A.I. Gusev, K.S. Langner, A. Proctor, D.M. Hercules, P. Tata, R. Venkataramanan, and W. Diven,
Journal of Mass Spectrometry, 1995, 30, 1469-1479 (1995). (32)

1994 • Back to top

2. "Characterization of Polystyrene on Etched Silver using Ion Scattering and X-ray Photoelectron Spectroscopy: Correlation of Secondary Ion Yield in Time-of-Flight SIMS with Surface Coverage,"
D.C. Muddiman, A.H. Brockman, A. Proctor, M. Houalla, and D.M. Hercules,
Journal of Physical Chemistry, 1994, 44, 11570-11575. (23)
1. "Quantitative Measurement of Cyclosporin A in Blood by Time-of-Flight Mass Spectrometry,"
D.C. Muddiman, A.I. Gusev, A. Proctor, D.M. Hercules, R. Venkataramanan, and W. Diven,
Analytical Chemistry, 1994, 66, 14, 2362-2368. (78)

Reviews/Tutorials (peer-reviewed)

6. "Epithelial Ovarian Cancer: Disease Etiology, Treatment and Investigational Gene, Metabolite and Protein Biomarkers,"
T. Islam Williams, K.L. Toups, D.A. Saggese, K.R. Kalli, W.A. Cliby, and D.C. Muddiman,
Journal of Proteome Research, 2007, 6(8), 2936-2962.
("Most accessed article" in J. Proteome Res.)
5. "Nucleic Acid Analysis by Fourier Transform Ion Cyclotron Resonance Mass Spectrometry At the Beginning of the Twenty-First Century,"
J.L Frahm and D.C. Muddiman,
Current Pharmaceutical Design, 2005, 11(20), 2593-2613.
4. "Perspectives on the use of ESI-FT-ICR Mass Spectrometry for STR Genotyping in the Post-Genome Era,"
A.P. Null and D.C. Muddiman,
Journal of Mass Spectrometry (Special Feature), 2001, 36, 589-606.
3. "Sequencing and Characterization of Larger Oligonucleotides by Electrospray Ionization Fourier Transform Ion Cyclotron Resonance Mass Spectrometry,"
D.C. Muddiman and R.D. Smith,
Reviews in Analytical Chemistry, 1998, 17, 1, 1-68.
2. "Matrix-Assisted Laser Desorption/Ionization Mass Spectrometry: Instrumentation and Applications,"
D.C. Muddiman, R. Bakhtiar, S.A. Hofstadler, and R.D. Smith,
Journal of Chemical Education, 1997, 74, 1288.
1. "Application of Secondary Ion and Matrix-Assisted Laser Desorption-Ionization Time-of-Flight Mass Spectrometry for the Quantitative Analysis of Biological Molecules,"
D.C. Muddiman, A.I. Gusev, and D.M. Hercules,
Mass Spectrometry Reviews, 1995, 14, 383-429.

Book Chapters

1. "Mass Spectrometric Characterization of DNA for Molecular Biology Applications: Advances using MALDI and ESI,"
D.S. Wunschel, D.C. Muddiman, and R.D. Smith,
Advances in Mass Spectrometry, 1998, Volume 14, 377-406.

Editorials

3. "Focus in Honor of James A. McCloskey, Recipient of the 2005 ASMS Award for a Distinguished Contribution in Mass Spectrometry",
P.A. Limbach and D.C. Muddiman,
Journal of the American Society for Mass Spectrometry, 2006, 17, 10, i1-i2.
2. "Lewis and Clark Proteomics: Are We There Yet?"
D.C. Muddiman,
Journal of Proteome Research, 2006, 5, 2, 221-222.
1. "Memoirs, Hercules Lineage, Students, Visiting Scientists and Staff,"
J.A. Gardella, Jr., F.E. Lytle, and D.C. Muddiman,
Analytical and Bioanalytical Chemistry, 2002, 372, 7, 669-675.

Plenary/Key Note Lectures

5. "Recent Advances in FT-ICR Mass Spectrometry Instrumentation"
D.C. Muddiman,
55th American Society for Mass Spectrometry Conference, Indianapolis, IN, 2007.
4. "Splitless nanoLC ESI-FTICR Mass Spectrometry in the Clinical Proteomics Arena,"
D.C. Muddiman,
Keynote Lecture, 20th International Symposium on Microscale Bioseparations, Vancouver, Canada, 2007.
3. "Discovery and Targeted Plasma Proteomics: Application to Ovarian Cancer and Cardiovascular Disease,"
D.C. Muddiman,
Keynote Lecture, Bascom Palmer Eye Institute, Evelyn F. and William L. McKnight Vision Research Center, University of Miami Miller School of Medicine, Miami, FL, 2006.
2. "Clinical Proteomics for Disease Diagnostics and Treatment,"
D.C. Muddiman,
Plenary Special Lecture, Korean Academy of Asthma, Allergy, and Clinical Immunology, Seoul, Korea, 2006.
1. "The Utility of FT-ICR Mass Spectrometry in the Clinical Domain: From Discovery to Targeted Proteomics,"
D.C. Muddiman,
Plenary Lecture, Trapped Ion Meeting, Department of Chemistry, Oxford University, London, England, 2005.

Patents

3. Peptide Originating from Vaccinia Virus
Inventors: Gregory Poland, Inna G. Ovsyannikova, Kenneth L. Johnson and David C. Muddiman
Provisional Patent Application Filed: 4/21/2006, Application Number 60,793,984
2. Dual Electrospray Ionization Source for Mass Spectrometer
Inventors: David C. Muddiman, Patrick Caskey, and Michael Burke
Filed: 02/04/2003, Application Serial No. 60/444,888
U.S. Utility Patent Filed 02/04/2004, Application Number 772229
Patent Issued 02/07/2006. US Patent Number 6,995,362
1. Naturally Processed Measles Virus Peptides Eluted From Class II HLA Molecules
Inventors: Gregory Poland, Inna G. Ovsyannikova, Kenneth L. Johnson and David C. Muddiman
Provisional Patent Application Filed: 05/2004, Application Number: 35,433