1. Sierzputowska, H. (1974) Spectroscopic properties of isoguanine. Master thesis (in Polish), Dept. of Biophysics, University of Warsaw.
2. Sierzputowska, H. (1980) The comparative studies of structure and properties of ethenocytidine, ethenoadenosine and their precursor nucleosides. Ph.D. thesis (in Polish), Dept. of Chemistry, University of Poznan.
3. Jaskolski, M., Krzyzosiak, W., Sierzputowska-Gracz, H. and Wiewiorowski, M. (1981) Comparative structural analysis of cytidine, ethenocytidine and their protonated salts. I. Crystal and molecular structure of ethenocytidine. Nucleic Acids Res. 9:5423-5442.
4. Krzyzosiak, W., Jaskolski, M., Sierzputowska-Gracz, H., and Wiewiorowski, M. (1982) II. IR spectra of cytidine, ethenocytidine and their protonated salts. Nucleic Acids Res. 10:2741-2753.
5. Kozerski, L., Sierzputowska-Gracz, H. Krzyzosiak, W., Jaskolski, M. and Wiewiorowski, M. (1984) III. 1H and 13C and 15N NMR studies at natural isotope abundance. Nucleic Acids Res. 12:2205-2223.
6. Sierzputowska-Gracz, H., Wiewiorowski, M., Kozerski, L., von Philipsborn, W. (1984) Proton coupled 15N NMR spectra of neutral and protonated ethenoadenosine and ethenocytidine at natural isotope abundance. Nucleic Acids Res. 12:6247-6258.
7. Agris, P.F., Sierzputowska-Gracz, H. and Smith, C. (1986) Transfer RNA Contains Sites of Localized Positive Charge: Carbon NMR Studies of 13C-Methyl Enriched E-coli and Yeast tRNAPhe. Biochemistry 25:5126-5131.
8. Sierzputowska-Gracz, H., Gopal, D. and Agris, P.F. (1986) Comparative structural analysis of 1-methyladenosine, 7-methylguanosine, ethenodenosine and their protonated salts. IV. 1H, 13C and 15N NMR studies at natural isotope abundance. Nucleic Acids Res. 14:7783-7801.
9. Sierzputowska-Gracz, H., Sochacka, E., Malkiewicz, A., Kuo, K., Gehrke, C.W. and Agris, P.F. (1987) Chemistry and structure of modified uridines in the anticodon Wobble position of transfer RNA is determined by thiolation. J. Amer. Chem. Soc. 109:7171-7177.
10. Schmidt, P.G., Sierzputowska-Gracz, H. and Agris, P.F. (1987) Internal motions in yeast tRNAPhe from 13C NMR relaxation rates of modified base methyl groups. Biochemistry 26:8529-8534.
11. Sierzputowska-Gracz, H. and Agris, P.F. (1988) Conformation of the Hypermodified Purine Queuine: Substrate for the Enzyme Transfer RNA-Guanine Transglycosylase. Magn. Res. Chem. 26:4-7.
12. Lauer, M.J., Blevins, D.G. and Sierzputowska-Gracz, H. (1989) 31P-NMR Determination of Phosphate Compartmentation in Leaves of Reproductive Soybeans (Glycine max L.) as Affected by Phosphate Nutrition. Plant Physiol. 89:1331-1336.
13. Ubillas, R., Barnes, C.L., Gracz, H., Rottinghaus, G.E., and Tempesta, M.S. (1989) X-Ray Crystal Structure of Oxalicine A, a Novel Alkaloid from Penicillium oxalicum. J. Chem. Soc., Chem. Commun., 1618-1619.
14. Forsythe, K.L., Gracz, H., Wong, T.C. and Feather, M.S. (1989) The Detection of Kestoses and Kestose-Related Oligosaccharides in Extracts of Festuca Arundinacea, Dactylis Glomerata L., Asparagus Officinalis L. Root Cultures and Invertase by 13C and 1H NMR Spectroscopy. Plant Phys. 92:1014-1020.
15. Sierzputowska-Gracz, H., Folkman, W., Guenther, R.H., Golankiewicz, B., and Agris, P.F. (1991) Structure and Conformation of the Hypermodified Purine Wyosine and in Isomers: A Comparison of Coupling Constants and Distance Geometry Solutions. Magn. Res. Chem. 29:885-842.
16. Sanson, D.R., Gracz, H., Tempesta, M.S., Fukuda, D.S., Nakatusukasa, W.M., Sands, T.H., Baker, P.J., and Mynderse, J.S. (1991) A82775B and A82775C, Novel Metabolites of an Unknown Fungus of the Order Sphaeropsidles. Tetrahedron 47:3633-3644.
17. Wong, T.C., Thalberg, K., Lindman, B., and Gracz, H. (1991) Surfactant 13C Relaxation and Differential Line Broadening in a System of a Polyanion and a Cationic Surfactant. J. Phys. Chem. 95:8850-8857.
18. Agris, P.F., Sierzputowska-Gracz, H., Smith, W., Malkiewicz, A., Sochacka, E., and Nawrot, B. (1992) Thiolation of Uridine Carbon-2 Restricts the Motional Dynamics of the Transfer RNA Wobble Position Nucleoside. J. Amer. Chem. Soc. 114:2652-2656.
19. Guenther, R., Hardin, C., Sierzputowska-Gracz, H., Dao, V., and Agris, P.F. (1992) Magnesium-Induced Conformational Transition in a DNA Analog of the Yeast tRNAPhe Anticodon Stem-Loop. Biochemistry 31:11004-11011.
20. Agris, P.F., Guenther, R.H., Sierzputowska-Gracz, H., Easter, L., Smith, W., Hardin, C.C., Santa-Coloma, T.A., and Reichert, L.E. Jr. (1992) Solution Structure of a Peptide Corresponding to a Receptor Binding Region of FSH (hFSH-β 33-53). J. Prot. Chem. 11:495-507.
21. Smith, W.S., Sierzputowska-Gracz, H., Sochacka, E., Malkiewicz, A., and Agris, P.F. (1992) Chemistry and Structure of Modified Uridine Dinucleosides are Determined by Thiolation. J. Amer. Chem. Soc. 114:7989-7997.
22. Chen, Y., Sierzputowska-Gracz, H., Guenther, R., Everett, K., and Agris, P.F. (1993) Methyl-5-Cytidine is Required for Cooperative Binding of Mg2+ and a Conformational Transition at the Anticodon Stem-Loop of Yeast Phenylalanine tRNA. Biochemistry 32:10249-10253.
23. Sierzputowska-Gracz, H., McKenzie, R.A., and Theil, E.C. (1994) Stability of the IRE (Iron Regulatory Element) in Ferritin mRNA Requires Guanine at a Specific site in the Hairpin Hexaloop. FASEB J. 8, 1266a.
24. Nawrot, B., Malkiewicz, A., Smith, W.S., Sierzputowska-Gracz, H., and Agris, P.F. (1995) RNA Modified Uridines: Chemical Synthesis and Initial Analysis of tRNA D-loop Oligomers with Tandem Modified Uridines. Nucleosides & Nucleotides 14:143-165.
25. Sierzputowska-Gracz, H., McKenzie, R.A., and Theil, E.C. (1995) The Importance of a Single G in the Hairpin Loop of the Iron Responsive Element (IRE) in Ferritin mRNA for Structure: An NMR Spectroscopy Study. Nucl. Acids. Res. 23:146-153.
26. Sierzputowska-Gracz, H. and Theil, E.C. (1995) 15N NMR and CD Studies of the IRE (Iron Regulatory Element) in Ferritin mRNA with Single Base Substitution in the Hairpin Loop. Nucl. Acids Res., Symposia Series 33:203-206.
27. Stuart, J.W., Basti, M.M., Smith, W.S., Forrest, B., Guenther, R., Sierzputowska-Gracz, H., Nawrot, B., Malkiewicz, A., and Agris, P.F. (1996) Structure of the trinucleotide D-acp3U-A with coordinated Mg2+ demonstrates that modified nucleosides contribute to regional conformations of RNA. Nucleosides and Nucleotides 15:1009-1028.
28. Zofia Gdaniec, Hanna Sierzputowska-Gracz and Elizabeth C. Theil . (1998) Iron Regulatory Element (IRE) and Internal loop/bulge Structure for Ferritin mRNA Studied by Co(III)hexammine binding, molecular modeling and NMR spectroscopy. Biochemistry 37:1505-1512.
29. Roberts, J.M., Sierzputowska-Gracz, H., Stejskal, E.O. Osteryoung, J.G. (1998) Determination of Li+ Self-diffussion Coefficient in an Aqueous Suspension of Sulfonated Polystyrene latex by Pulsed-Field-Gradient, Spin-Echo NMR. J. Phys. Chem. B. 102:7735-7739).
30. Hardin, C.C., Sneeden, J.L., Lemon, S.M., Corregan, M.J., Brown, B.A., II, Guenther, R.H., and Sierzputowska-Gracz, H. (1999) Structural properties of the isolated 5'-distal nontranslated polypyrimidine tract from hepatitis A RNA., NAR 27:665-673.
31. E.C.Theil, Y.Ke, Z.Gdaniec and H. Sierzputowska-Gracz (1999) The IRE Model for Families of RNA Structures RNA Biochemistry and Biotechnology (241-247). ed. Kluwer Academic Publishers.
32. Gorman, C. B.; Smith, J. C.; Hager, M. W.; Parkhurst, B. L.; Sierzputowska-Gracz, H.; Haney, C. A., (1999) Molecular Structure-Property Relationships for - Transfer Rate Attenuation in Redox-Active CoreDendrimers, J. Am. Chem. Soc., 121, 9958-9966.
33. Crouse, D.A., Sierzputowska-Gracz, H., and Mikkelsen, R.L. Optimization of sample pH and temperature for 31P-Nuclear Magnetic Resonance Spectroscopy of Poultry Manure. Extracts Commun. Soil Sci.Plant Anal., 31(1&2), 229-240 (2000).
34. Yaohuang Ke, Hanna Sierzputowska-Gracz, Zofia Gdaniec and Elizabeth C. Theil(2000) Internal Loop/Bulge and Hairpin Loop of the Iron Responsive Element (IRE) of Ferritin mRNA Contribute to Maximal IRP2 Binding and Translational Regulation in the Iso-IRE/Iso-IRP Family Biochemistry 39: (20) 6235-6242.
35. D.Collins, K.W.Kim. W.C.Holton. H.Sierzputowska-Gracz, E..Stejskal (2000) NMR Quantum computation with indirectly coupled gates, Physical Review 62:,0223041-44.
36. Capanema, E.A., Balakshin, M.Yu., Chen, C-L., Gratzl, J.S and Gracz, H. (2001) Structural Analysis of Residual and Technical Lignins by 1H-13C Correlation 2D NMR-Spectroscopy, Holzforshung 55, 302-308.
37. Capanema, E.A., Balakshin, M.Yu., Chen, C-L., Gratzl, J.S , Kirkman, A. and Gracz, H. (2001) Biobleaching of pulp with dioxygen in the laccase-mediator system- reaction mechanisms for degradation of residual lignin J. of Molecular Catalysis B:Enzymatic 13, 1-16.
38. Wolak, J, Jia, Xin, Gracz, H, Stejskal, E.O, White, J.L., Wachowicz, M, Jurga S (2003) Polyolefin Miscibility: Solid-State NMR Investigations of Phase behavior in Saturated Hydrocarbon Blends. Macromolecules 36, 4844-4850.
39. Merkel, T.C. Toy, L.G., Andrady, A.L.,Gracz, H., Stejskal, E.O.,(2003) Investigation of Enhanced Free Volume in Nanosilica-filled Poly(1-trimethylsilyl-1-propyne)by 129Xe NMR spectroscopy, Macromolecules 36, 353-358.
40. Balakshin, M.Yu., Capanema, E.A., Chen, C-L. and Gracz, H (2003) Elucidation of the Structures of Residual and Dissolve pine Kraft lignins using an HMQC NMR Technique, Journal of Agricultural and Food Chemistry 51, 6116-6127.
41. Chen, C-L, Capanema, E.A., Chen, C-L. and Gracz, H, S., (2003) Comparative Studies on Delignification of Pine Kraft-Anthraquinone Pulp with Hydrogen peroxide by Binucleus Mn(IV). Complex catalysis. Journal Of Agricultural and Food Chemistry 51, 6223-6232.
42. Thomas K. Mitchell, Fatima Alejos-Gonzalez, Hanna S. Gracz, David A. Danehower, Margaret E. Daub and William Scott Chilton (2003) Xanosporic acid, an intermediate in bacterial degradation of the fungal phototoxin cercosporin. Phytochemistry 62(5), 723-732.
43. Richard H.Guenther, Tim L. Sit, Hanna S. Gracz, Michael A. Dolan, Hannah L. Townsend, Guihua Liu, Winnell H.Newman, Paul F. Agris and Steven A.Lommele (2004), Structural Characterization of an Intermolecular RNA-RNA interaction involved in the transcription regulation element of a bipartite plant virus, NAR 32: (9)(p 2819-2828)
44. Marcin Wachowicz, Justyna Wolak, Hanna Gracz, Edward Stejskal, Stefan Jurga, Elizabeth F. McCord, Jeffrey L.White (2004) Length Scales Perturb Chain Packing in Amorhous Polymers, Macromolecules 37,(p 4573-4579)
45. Dorota Gryko, Daniel T. Gryko, Hanna Sierzputowska-Gracz, Piotr Piątek, Janusz Jurczak, (2004, Factors Influencing the Course of the Macrocyclization of α,ω-Diamines with Esters of α,ω-Dicarboxylic Acids, Helvetica Chimica Acta), 87(1), (p 156-166).
46. Sung-Won Ha, Hanna S. Gracz, Alan E. Tonelli, Samuel Hudson (2005) Structural Study of Irregular Amino Acid Sequences in the Heavy Chain of Bombyx mori Silk Fibroin, Macromolecules 6,(p 2563-2569)
47. Tamer Uyar, Marcus A. Hunt, Hanna S. Gracz, Alan E. Tonelli (2006) Crystalline Cyclodextrine Inclusion Compounds Formed with Aromatic Guests: Guest-Dependent Stoichiometries and Hydration-Sensitive Crystal Structures, Crystal Growth & Design 6: (5) (p 1113-1119).
48. Tamer Uyar, Hanna S. Gracz, Mariana Rusa, I. Daniel Shin, Ahmed-El Shafei and Alan E. Tonelli (2006) Polymerization of Styrene in γ-Cyclodextrin Channels:Lightly Rotaxanated Polystyrenes with Altered Stereosequences Polymer 47, 6948-6955
49. Zdzislaw M. Szulc, Jacek Bielawski, Hanna Gracz, Marietta Gustilo, Nalini Mayroo, Yusuf A. Hannun Lina M. Obeid and Alicja Bielawska (2006) Tailoring structure-function and targeting properties of ceramides by site-specific cationization Bioorganic & Medicinal Chemistry 14(18) 7083-7104
50. Changhong Ke, Michael Humeniuk, Hanna S-Gracz, Piotr E. Marszalek (2007)Direct Measurments of Base Stacking Interactions in DNA by Single-Molecule Atomic –Force Spectroscopy Phys. Rev. Lett. 99, 018302-4
51. Hyun Suk Whang , Franck A.P. Vendeix, Hanna S.Gracz, John Gadsby, Alan Tonelli (2007) NMR Studies of the Inclusion Complex of Cloprostenol Sodium Salt with β-cyclodextrin in Aqueous Solution, Pharmaceutical Research 25(5):1142-1149
52. Jaehoon Kim, Hanna S. Gracz George Roberts, Douglas J. Kiserow (2008) Spectroscopic analysis of poly(bisphenol A carbonate) using high resolution 13C and 1H NMR Polymer 49 (394-404)
53. Michael F.Davis, Hanna Gracz, Franck A.P.Vendeix, Vesna de Serrano, Aswin Somasundaram, Sean M.Decatur, and Stefan Franzen (2009) Different Modes of Binding of Mono-, Di-, and Trihalogenated Phenols to the Hemoglobin Dehaloperoxidase from Amphitrite ornate Biochemistry 48(10),2164-2172
54. Zdzislaw M. Szulc, Aiping Bai, Jacek Bielawski, Nalini Mayroo, Doreen E. Miller, Hanna Gracz,Yusuf A. Hannun, Alicja Bielawska, (2010) Synthesis, NMR characterization and divergent biological actions of 2'-hydroxy-ceramide/dihydroceramide stereoisomers in MCF7 cells Bioorganic & Medicinal Chemistry, Volume 18, Issue 21, 1 November 2010, Pages 7565-7579
55. Mikhail Balakshin, Ewellyn Capanema, Hanna Gracz, Hou-min Chang, Hasan Jameel (2011) Quantification of lignin–carbohydrate linkages with high-resolution NMR spectroscopy Planta, Vol 233, 6, 1097-1110 Springer-Verlag 2011
56. Elke Feese, Hasan Sadeghifar, Hanna S. Gracz, Dimitris S. Argyropoulos, Reza A. Ghiladi (2011) Photobactericidal Porphyrin-Cellulose Nanocrystals: Synthesis, Characterization and Antimicrobial Properties, Biomacromolecules (in press September)
57. Mark McClure , Mary McMillan, Hanna Gracz. High Resolution Two–Dimensional NMR Spectroscopy of Cobalt(III) Complex containing Tris(2-aminoethyl)amine and 1,10-Phenanthroline. (2011) Journal of undergraduate Chemistry Research accepted for publication
58. B. R. Williamson1, H. S. Gracz2, and A. E. Tonelli, (2011) Formation of Inclusion Complexes between a Non-Crystalline Modified β-Cyclodextrin and Homo- and Block Copolymers of Poly(propylene glycol), Biomacromolecules (in press September 2011)
59. Mahir Rabbi, Laura Manson, Hanna S-Gracz Piotr E. Marszalek (2011) Origin of overstretching transitions in single and double stranded nucleic acids Physical Review Letters (under review)
1. Agris, P.F. and Sierzputowska-Gracz, H. (1990) Three dimensional dynamic structure of tRNA's by nuclear magnetic resonance. In: Chromatographic and other analytical methods in nucleic acids modification research, HPLC, GC, NMR, FT-IR, Elsevier Publishing Co., pp. 159-223, 225-254.
2. Theil, E.C., McKenzie, R.A., Sierzputowska-Gracz, H. (1994) Structure and Function of IREs, the Noncoding mRNA Sequences Regulating Synthesis of Ferritin, Transferrin Receptor and (Erythroid) 5-Aminolevulinate Synthase. In: Progress in Iron Research, C. Hershko, ed., Plenum Publishing Corp., pp. 111-118.