Home Directory

Each user has a home directory. The user's home directory on the Linux clusters (henry2 and tim) is identical. User's home directory on the POWER5 system is the p5 subdirectory of their cluster home directory. That is if a user has a home directory /home/desmith on the cluster their p5 home directory will be /home/desmith/p5. Quota for home directory space includes both cluster and power5 use. Total available space in the home file system is relatively small and quotas are used to manage the available space. Home directories are intended to be used to hold commonly used scripts, environment configuration files, and modest size source trees. Home directories are backed up daily. Only one copy of each file is retained in the backup. Files which have been deleted for more than 7 days are subject to being deleted from the backup.

Scratch Space

Scratch space is intended to be used for the storage requirements for running jobs. In particular, large input or output files should use scratch space during job execution. Scratch file systems are world writable. Users should create a directory for their use to avoid potential file name conflicts with other users.

Scratch space is not backed up.

• Local Scratch Space

  Local scratch space is directly connected to the compute node. On the Linux clusters the local scratch file system available to users is /scratch. Local scratch file system contents are only available to the local node to which the file system is directly connected. Use of the local scratch space must be managed from the user's LSF script (since there is no way to know ahead of time which nodes a job may be assigned) both movement of files to the space and removal of files after execution completes. Local scratch space on the cluster is subject to immediate removal of files at the completion of the LSF job.

  No local scratch space is available to user jobs on the power5 system.

• Shared Scratch Space

  In addition to local scratch space the Linux clusters also have shared scratch space. These file systems are available via NFS from the login nodes and from all of the compute nodes (across both clusters). /share and /share3 are currently available to any user needing scratch space.

  Shared scratch file systems are subject to periodic purge and are not backed up.

  Any file in shared scratch space is subject to removal at any time. A purge is used to maintain free space in the file system. While the purge generally allows files to remain on the shared scratch file systems for a week or more, during periods of high disk use this may not be true and files that are only a day or two old may also be removed by the purge.

  As with local scratch space this storage is intended to provide large storage space required by jobs during execution.

  On the power5 system the /scratch file system is available from all nodes. This file system uses IBM's general parallel file system (gpfs). The storage is connected by fibre channel to each node.

  A GPFS file system is also available on the Linux cluster (henry2). This file system /gpfs_share has a 1TB per project quota. Codes spending significant amounts of time doing parallel I/O - and any code using MPI-IO - should use /gpfs_share. Projects requiring more than 1TB of run-time storage may purchase additional GPFS or NFS storage.

Mass Storage System

It is anticipated that research groups will have up to a 100GB group quota for mass storage space with options to purchase additional quota if required.

Mass storage space is available from all systems intended to support interactive logins. A disk backup of mass storage space is maintained as described below.

Mass storage space is not available from compute nodes and can not be used as an alternative to scratch space for running jobs.

• Configuration

  There are currently two mass storage file systems, /ncsu/volume1 and /ncsu/volume2. Users will only be provided a directory on one of these file systems. Each file system has 8TB of disk space.

  The disks for the mass storage file systems are part of the university Dell/EMC storage management system that is also used for AFS, IMAP, NDS, and other university storage needs.

  Separate file servers are used for /ncsu/volume1 and /ncsu/volume2. Volume1 is served by an IBM JS20 running AIX. Voluem2 is served by a Sun 280R running Solaris and using Veritas volume manager and Veritas file sytem. Both file systems are availabe from login nodes via NFS.

• Backups

  Backup frequency for the HPC storage system is daily from the /home, /ncsu/volume1, and /ncsu/volume2 file systems to a tape library. One copy of each file is maintained in the tape library. When a file is modified on disk the new version of the file replaces any previous backup of that file.

  Files removed from /home, /ncsu/volume1, or /ncsu/volume2 file system will remain in the backup for at least one week.

  A consequence of the backup policy is that files that are updated with the same name will overwrite the backup version during the daily update. Files that are being modified for which previous versions may be needed should be modified using a file naming scheme to retain previous versions with unique file names.

• HSM

  An additional level of management is utilized on /ncsu/volume1. Tivoli Space Manager is used to migrate older, larger files from the file system disk to tape. Migrated files are retrieved automatically if they are accessed.

  Space manager seeks to maintain the disk usage level for /ncsu/volume1 between 85% and 90%.